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Second Schedules.53; Second Schedule Parts I–IV

Second Schedule – Exemptions and tax concessions

Lists income that is exempt, reduced rates, reductions in tax liability, and exemptions from particular sections (such as withholding or minimum tax). The searchable clause table is below.

Who it applies to

Anyone claiming an exemption or concession: employees, pensioners, NPOs, funds, SEZ and specified businesses

Structure and contents

Part / areaWhat it covers
Part IExemptions from total income: the income is not taxed at all (for example clause 13 gratuity, clause 139 medical, clause 58A non-profit universities, clause 126E SEZ enterprises)
Part IIReduction in tax rates (for example clause 1, flying and submarine allowance at 2.5%)
Part IIIReduction in tax liability (for example clause 2, 25% reduction for teachers and researchers; clause 19, 25% for women-led startups)
Part IVExemption from specific provisions: withholding (s.148, s.151, s.153), minimum tax (s.113), audit and so on

How it works in practice

Find the clause that matches the income and the person, then meet every condition in it (NTN, certificate, deadline, approval). Exemptions are read strictly, and the burden of proof is on you. Many exemptions also need an exemption certificate under s.159 to stop withholding.

Key clauses

PartClauseSubjectWhat it does
Part Icl. 5AGovernment allowances abroadSalaryAllowances or perquisites paid outside Pakistan by the Government to a citizen serving abroad.
Part Icl. 9Family pensionSalaryPension granted to the families and dependants of public servants or armed forces members who die in service. (Ordinary pensions are now taxed: 0% up to Rs 10 million, 5% above.)
Part Icl. 12Commutation of pensionSalaryCommutation of pension received from the Government or an FBR-approved pension scheme.
Part Icl. 13GratuitySalaryExempt: government employees per service rules; approved gratuity fund in full; FBR-approved scheme up to Rs 300,000; otherwise the lower of 50% or Rs 75,000. Not for payments received abroad, non-employee directors, non-residents, or a second gratuity.
Part Icl. 16Shaheed family pensionsSalarySpecial family pension, dependants' pension and children's allowance of families of Shaheeds of the armed forces.
Part Icl. 19Leave encashment (LPR)SalaryEncashment of leave preparatory to retirement of armed forces members and federal or provincial government employees.
Part Icl. 22Provident Funds Act fundSalaryPayments from a provident fund governed by the Provident Funds Act 1925.
Part Icl. 23Recognised provident fundSalaryAccumulated balance payable to an employee from a recognised provident fund.
Part Icl. 23AVoluntary pension (VPS)SalaryUp to 50% of the accumulated VPS balance withdrawn on retirement, disability or death.
Part Icl. 24Benevolent Fund grantsSalaryGrants under the Central Employees Benevolent Fund and Group Insurance Act 1969.
Part Icl. 26Workers' Participation FundSalaryAmounts received by a worker from the Workers' Participation Fund.
Part Icl. 39AArmed forces allowancesSalaryInternal security, kit, ration, special messing, SSG, Northern Areas and height allowances.
Part Icl. 53AZero-cost perquisitesSalaryFree or subsidised food in hotels and restaurants, education at the employer's school, and medical treatment at the employer's hospital, provided to staff.
Part Icl. 55–56Judges' perquisitesSalaryOfficial residence or house rent, official car, and specified allowances of Supreme Court and High Court judges.
Part Icl. 139Medical facility and allowanceSalary(a) Free medical treatment, hospitalisation or reimbursement under the terms of employment is exempt (hospital NTN and employer attestation needed). (b) Medical allowance up to 10% of basic salary is exempt if no free treatment or reimbursement is provided.
Part Icl. 149Foreign-national salarySalarySalary of non-resident foreign technicians or international buying house staff paid from abroad, subject to conditions.
Part Icl. 57Funds and trustsFunds & NPOsIncome of recognised provident, approved superannuation, gratuity and pension funds, and of listed national institutions.
Part Icl. 58ANon-profit educationFunds & NPOsIncome of a university or educational institution run by a non-profit organisation solely for education.
Part Icl. 59–60Charitable and religious incomeFunds & NPOsIncome of trusts held for religious or charitable purposes and applied in Pakistan; voluntary contributions to religious or charitable institutions.
Part Icl. 66Named welfare institutionsFunds & NPOsIncome of institutions such as the Edhi Foundation, Al-Shifa Trust and Fatimid Foundation.
Part Icl. 126Public sector universitiesFunds & NPOsIncome of public sector universities established solely for education.
Part Icl. 142Social security institutionsFunds & NPOsSocial security contributions received by the provincial employees' social security institutions.
Part Icl. 78Foreign currency accountsInvestmentsProfit on certain foreign currency accounts and certificates (subject to conditions in the clause).
Part Icl. 79NRVA / NRBVA accountsInvestmentsProfit on rupee accounts of non-residents funded only by foreign exchange remittances.
Part Icl. 99Mutual funds and REITsInvestmentsIncome of collective investment schemes and REITs that distribute at least 90% of accounting income.
Part Icl. 99AProperty to REITsInvestmentsGains on sale of immovable property or SPV shares to a REIT scheme within the time limit.
Part Icl. 99CPE and VC fundsInvestmentsIncome of private equity and venture capital funds distributing at least 90% of accounting income.
Part Icl. 103AGroup dividendsInvestmentsInter-corporate dividends within a group taxed under s.59AA, if the group return is filed.
Part Icl. 114BProperty allotted for serviceInvestmentsFirst sale of property allotted to specified persons (such as armed forces personnel) for services rendered.
Part Icl. 126ESpecial Economic ZonesBusinessIncome of zone enterprises for 10 years from commercial operation (or up to 30 June 2035), and of zone developers for 10 years.
Part Icl. 132Power projectsBusinessProfits of power generation projects set up since 1988, subject to conditions.
Part Icl. 145AErstwhile tribal areasBusinessIncome not taxable before the 25th Amendment, of residents of the former FATA/PATA, up to 30 June 2026.
Part Icl. 147Housing authoritiesBusinessIncome of FGEHA and Naya Pakistan Housing and Development Authority for the specified years.
Part IIcl. 1Flying and submarine allowanceReduced rateTaxed at 2.5% as a separate block for pilots, flight engineers, navigators and submarine officers.
Part IIcl. 5A–5ACReduced withholding for specified payeesReduced rateReduced rates under s.151 and s.152(2) for specified foreign lenders and cases.
Part IIcl. 24A–24DReduced s.153 and minimum tax ratesReduced rateLower rates under s.153 and s.113 for specified sectors and supplies.
Part IIIcl. 2Teachers and researchersReduced liability25% reduction in tax on salary of full-time teachers and researchers in HEC-recognised non-profit institutions and government research institutions.
Part IIIcl. 9 / 9BLow-cost housingReduced liability50% reduction for low-cost housing projects; 90% reduction for NAPHDA or Ehsaas low-cost housing projects.
Part IIIcl. 17Cotton ginnersReduced liabilityTax limited to 1% of turnover from lint, seed, oil and cake (final for those activities).
Part IIIcl. 19Women-led startupsReduced liability25% reduction in tax on business income of women's startups established from 1 July 2021.
Part IVcl. 11AMinimum tax exclusionsExempt from sectionMinimum tax under s.113 does not apply to listed persons such as NIT, mutual funds and REITs.
Part IVcl. 47AResale of imported goodsExempt from sections.153 withholding does not apply to the sale of goods the seller imported and paid s.148 tax on.
Part IVcl. 47BPayments to fundsExempt from sectionNo withholding under s.150, s.151 and s.233 on payments to NIT, mutual funds, pension funds, REITs and recognised funds.
Part IVcl. 56Import exemptionsExempt from sections.148 does not apply to specified imports.
Part IVcl. 59Profit on debt exemptionsExempt from sections.151 does not apply to specified recipients.
Part IVcl. 98Pakistani-flag shipsExempt from sectionNo s.148 on import of ships and specialised crafts flying the Pakistani flag, up to 2030.
Part IVcl. 103Bahbood and Pensioners' BenefitExempt from sectionProfit on Bahbood certificates and Pensioners' Benefit Accounts is taxed under Division I slabs instead of the FTR.
Part IVcl. 105Recently auditedExempt from sectionNo selection for audit under s.177 or s.214C if audited in any of the last 3 years, unless the Board approves.
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